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Research Fellow - Bioinformatician (Cancer Science Institute) - Dr Jason Pitt's Lab 1

Date: 04-May-2022

Location: Kent Ridge Campus, SG

Company: National University of Singapore

Job Description

The position of Postdoctoral Fellow with an emphasis on cancer genomics and bioinformatics is immediately available in the laboratory of Dr. Jason Pitt, which integrates data science and biological expertise to facilitate precision oncology. The Pitt Laboratory achieves this by developing cutting-edge software that allows rapid interrogation and interpretation of large genomic datasets. This position is connected to the Cancer Science Institute (CSI) Translational theme, which is building knowledge-bases and algorithms to recommend cancer treatments based on a patient’s genetic profile. This fellow will also work closely with clinician-scientist Dr. Anand Jeyasekharan to help facilitate molecular tumor boards at National University Hospital. An experienced genome analyst will have the unique opportunity to impact real-world precision oncology while developing skills in cloud computing, data science, and augmented intelligence.

 

RESPONSIBILITIES

 

Candidate will work with the CSI Translational Team to deliver the following:

 

1) Aggregation and analysis of publicly available datasets

Data wrangling of genomics and clinical datasets
Processing and analysis of NGS data (e.g. DNA- & RNA-seq)
Apply novel prediction algorithms over large-scale data

 


2) A knowledge graph for precision oncology

Integrate drug, protein/gene, clinical trial, and genomics data
Overlay analytics to discover novel biological and clinical insights
Facilitate oncologist queries based on an entity of interest

Qualifications

REQUIREMENTS

 

  • Ph.D. in bioinformatics, genomics, computer science, information systems, statistics, or related fields

  • Experience analyzing data derived from high-throughput technologies

  • Strong Python programming skills and proficiency with Unix-based systems

  • Strong analytical and critical thinking skills

  • Evidence of leading projects to completion

  • Excellent written and spoken English

 

PREFERENCES

 

  • Previous experience with cancer genomics data

  • Familiarity with Amazon Web Services

  • Database management experience (SQL, NoSQL, Elasticsearch, etc.)

  • Experience with collaborative software development via github/gitlab

More Information

HOW TO APPLY

Applications should include full curriculum vitae, publication list (if applicable), and contact information for 2-3 referees. Please also include a single page cover letter summarizing your previous research, analytical/programmatic expertise, and why this position is of interest to you.

 

Apply via: https://career44.sapsf.com/sfcareer/jobreqcareer?jobId=5336&company=nationalunP2

 

Dr. Jason J. Pitt

Special Fellow

Email: jason.j.pitt[at]nus.edu.sg

Covid-19 Message

 

At NUS, the health and safety of our staff and students is one of our utmost priorities and COVID-vaccination supports our commitment to ensure the safety of our community and to make NUS as safe and welcoming as possible. Many of our roles require significant amount of physical interactions with student / staff / public members. Even for job roles that can be performed remotely, there will be instances where on-campus presence is required.

 

With effect from 15 January 2022, based on Singapore’s legal requirements, unvaccinated workers will not be able work at the NUS premises. As such, we regret to inform that job applicants need to be fully COVID-19 vaccinated for successful employment with NUS.[1]


[1]  MOM Updated advisory on COVID-vaccination at the Workplace, subject to changes in accordance with the national COVID-19 measures